Greenleaflab/archr
WebOct 14, 2024 · #' @param db A string indicating the database or a path to a database to use for peak annotation. Options include ArchR, #' LOLA, and a valid path to a file of class … WebAug 13, 2024 · Hello, I am trying to export the peaks by cells accessibility matrix for external use, but when I use getMatrixFromProject the number of cells is much fewer than the …
Greenleaflab/archr
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WebSep 28, 2024 · I am using my dataset for ArchR analyses. These are scATAC seq dataset. I am able to run through the initial steps of creation of arrow files but it seems to be stuck at "Creating ArrowFile From Temporary File 9.113 mins elapsed" for over two hours. WebJul 20, 2024 · ArchR logging to : ArchRLogs/ArchR-getMarkerFeatures-c733ad6d8bf-Date-2024-01-04_Time-05-28-14.log If there is an issue, please report to github with logFile! 2024-01-04 05:28:14 : Matching Known Biases, 0.001 mins elapsed.
WebLove Archr. I went through the entire pipeline with my multiome paired scRNAseq and ATACseq data on 11 different samples. Now I have clusters and UMAPs generated via … WebOct 17, 2024 · GreenleafLab / ArchR Public Notifications Fork 95 Star 282 Code Issues 16 Pull requests 9 Discussions Actions Projects Security Insights New issue ArchR object …
WebJun 6, 2024 · GreenleafLab / ArchR Public. Notifications Fork 95; Star 282. Code; Issues 15; Pull requests 9; Discussions; Actions; Projects 0; Security; Insights; Getting … Web4 hours ago · I noticed that when I used the getMatrixFromProject function, there was a problem about HDF5. The following is the detailed related content: Attach your log file ArchR-getMatrixFromProject-1bfab75719cfea-Date-2024-04-14_Time-05-37-50.log...
WebHello, I copy the ArchR output to another computer, while plotEmbedding function does not work due to the working directory sorted in ArchR object.
Web5 hours ago · GreenleafLab / ArchR Public. Notifications Fork 96; Star 284. Code; Issues 18; Pull requests 9; Discussions; Actions; Projects 0; Security; Insights ... , reducedDims … how do you handle objectionsWebMay 27, 2024 · GreenleafLab / ArchR Public. Notifications Fork 95; Star 282. Code; Issues 15; Pull requests 9; Discussions; Actions; Projects 0; Security; Insights New issue Have … how do you handle multiple projectsWebLove Archr. I went through the entire pipeline with my multiome paired scRNAseq and ATACseq data on 11 different samples. Now I have clusters and UMAPs generated via LSI-combined and harmony and I would like to run cellchat on them. But I have no idea how to extract the RNAseq seurat object from my Archr Project. phonak rise conferenceWebArchR logging to : ArchRLogs/ArchR-addGeneIntegrationMatrix-11f6561f7d62-Date-2024-09-29_Time-12-16-33.log If there is an issue, please report to github with logFile! 2024-09-29 12:16:33 : Running Seurat's Integration Stuart* et al 2024, 0.002 mins elapsed. phonak ric modelWeb5 hours ago · GreenleafLab / ArchR Public. Notifications Fork 96; Star 284. Code; Issues 18; Pull requests 9; Discussions; Actions; Projects 0; Security; Insights ... , reducedDims = "IterativeLSI" ) ArchR logging to : ArchRLogs/ArchR-addPeak2GeneLinks-28e376a2da62-Date-2024-04-14_Time-16-57-19.log If there is an issue, please report to github with … phonak ric hearing aidWebJul 5, 2024 · Version. 1.0.2. Package repository. View on GitHub. Installation. Install the latest version of this package by entering the following in R: install.packages ("remotes") … how do you handle pressure call centerWebOct 5, 2024 · ArchR logging to : ArchRLogs/ArchR-getMarkerFeatures-ea792557637e-Date-2024-09-15_Time-19-21-01.log If there is an issue, please report to github with logFile! 2024-09-15 19:21:02 : Matching … how do you handle objections in sales